Identification of anchor genes during kidney development defines ontological relationships, molecular sub-compartments and regulatory pathways. Thiagarajan RD, Georgas KM, Rumballe BA, Lesieur E, Chiu H, Taylor D, Tang DTP, Grimmond SM, and Little MH. (2011). PLOS one Feb 28;2(2):e17286

The expression of the ubiquitin ligase SIAH (seven in absentia homolog) 2 is mediated through gene copy number in breast cancer and is associated with a basal-like phenotype and p53 expression. Chan P, Moeller A, Liu MC, Sceneay JE, Wong CS, Waddell N, Huang KT, Dobrovic A, Millar EK, O'Toole SA, McNeil CM, Sutherland RL, Bowtell DD, and Fox SB. (2011). Breast Cancer Research, 13:R19

HER3 and downstream pathways are involved in colonization of brain metastases from breast cancer. Da Silva L, Simpson PT, Smart CE, Cocciardi S, Waddell N, Lane A, Morrison BJ, Vargas A, Healey S, Beesley J, Pakkiri P, Parry S, Kurniawan N, Reid L, Keith P, Faria P, Pereira E, Skalova A, Bilous M, Balleine RL, Do H, Dobrovic A, Fox S, Franco M, Reynolds B, Khanna K, Cummings M, Chenevix-Trench G, and Lakhani SR. (2010). Breast Cancer Res Treat. 12:R46

Next-Generation Sequencing of Coccidioides immitis Isolated during Cluster Investigation. Engelthaler, DM, Chiller, T, Schupp, JA, Colvin, J, Beckstrom-Sternberg, SM, Driebe, EM, Moses, T, Tembe, W, Sinari, S, Beckstrom-Sternberg, JS, Chistoforides, A, Pearson, JV, Carpten, J, Keim, P, Peterson, A, Terashita, D, and Balajee, SA. (2011). Emerging Infectious Diseases 17, 227-232

Mineralocorticoid Receptors: Evolutionary and pathophysiological considerations. Kassahn, KS, Ragan, MA, and Funder, JQ. (2011) Endocrinology doi:10.1210/en.2010-1444.

Sequencing Transcriptomes in toto. Kassahn K, Waddell N, and Grimmond SM. (2011). J. Integrative Biology Feb 4 (Epub ahead of print).

The Uniqueome: A mappability resource for short-tag sequencing. Koehler R, Issac H, Cloonan N, and Grimmond SM. (2011). Bioinformatics Jan 15;27(2) : 272-4 Epub 2010 Nov 12

Copy number and targeted mutational analysis reveals novel somatic events in metastatic prostate tumors. Robbins CM, Tembe WA, Baker A, Sinari S, Moses TY, Beckstrom-Sternberg S, Beckstrom-Sternberg J, Barrett M, Long J, Chinnaiyan A, Lowey J, Suh E, Pearson JV, Craig DW, Agus DB, Pienta KJ, and Carpten JD. (2011). Genome Res Jan;21(1):47-55.

Microarray-based genome-wide association studies using pooled DNA. Szelinger S, Pearson JV, and Craig DW. (2011). Methods Mol Biol;700:49-60.

X-MATE: a flexible system for mapping short read data. Wood DL, Xu C, Pearson JV, Cloonan N, and Grimmond SM. (2011). Bioinformatics Feb 15;27(4): 580-1. Epub 2011 Jan 6

QCMG Publications for 2009

QCMG Publications for 2010